species:   Opsin
pid:       PID1934
parent:    n_os_milR_54
paralog:   
locus:     JAAVMX010000004.1:548920-549062
matures:   ['AUACAAAUUUGGUGGCGCUAAGACC', 'UCUCAGCGCCACCAAAUUUGUAUAC']
srr:       SRR12952905
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952905.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952905.cram JAAVMX010000004.1:548920-549062

0 out of bounds
5 alignments
1 proper strand
1 stranded perfect matches

                 ***********************                                                                ***********************                
CCCCAUAGGUCUCAGCGCCACCAAAUUUGUAUACGCAAUGUAUCUGCCCGCACCCGCCCGAGCAAUUUUUCAAGGGGCAUGGCUCGGGCGGGUGCGGGCAGAUACAUAACGUAUACAAAUUUGGUGGCGCUAAGACCUGGGGG
((((.(((((((.((((((((((((((((((((((..((((((((((((((((((((((((((..................))))))))))))))))))))))))))..)))))))))))))))))))))).)))))))))))
----------------------------------------------------------------------------------------------------------------AUACAAAUUUGGUGGCGCUAAGACC------ l=25 a=0 c
---------UCUCAGCGCCACCAAAUUUGUAUAC------------------------------------------------------------------------------------------------------------- l=25 a=0 c*
----------------------------------------------------------------------------------------------------------UAACGUAUACAAAUUUGGUGG---------------- l=21 a=1 ma
-------------------ACCAAAUUUGUAUACGCAAUG------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

----------------------------------------------------------------------------------------------------------UAACGUAUACAAAUUUGGUGG---------------- l=21 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-100110011100
fn-001
